stable
Examples
CRP energy logo
Splice site probability logo
WW domain information logo
ARS enrichment logo
Neural network saliency logo
Logomaker logo
Color schemes
References
Tutorial
Lesson 1: Basic logo creation and styling
Lesson 2: Logos from alignments
Lesson 3: Transform between logos of different types
Lesson 4: Saliency logos
Lesson 5: Advanced styling
Lesson 6: Glyph objects
Implementation
Logo class
Glyph class
matrix functions
dataset functions
functional tests
logomaker
Docs
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Index
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Index
A
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D
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F
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G
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H
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L
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O
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R
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S
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T
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V
A
alignment_to_matrix() (in module logomaker)
D
demo() (in module logomaker)
draw() (logomaker.Glyph method)
(logomaker.Logo method)
draw_baseline() (logomaker.Logo method)
F
fade_glyphs_in_probability_logo() (logomaker.Logo method)
G
get_example_matrix() (in module logomaker)
Glyph (class in logomaker)
H
highlight_position() (logomaker.Logo method)
highlight_position_range() (logomaker.Logo method)
L
list_example_datafiles() (in module logomaker)
list_example_matrices() (in module logomaker)
Logo (class in logomaker)
O
open_example_datafile() (in module logomaker)
R
run_tests() (in module logomaker)
S
saliency_to_matrix() (in module logomaker)
sequence_to_matrix() (in module logomaker)
set_attributes() (logomaker.Glyph method)
style_glyphs() (logomaker.Logo method)
style_glyphs_below() (logomaker.Logo method)
style_glyphs_in_sequence() (logomaker.Logo method)
style_single_glyph() (logomaker.Logo method)
style_spines() (logomaker.Logo method)
style_xticks() (logomaker.Logo method)
T
transform_matrix() (in module logomaker)
V
validate_matrix() (in module logomaker)
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